Exploring the Mechanism of Action of Naringenin in the Treatment of Periodontitis Based on Network Pharmacology Methods

Authors

  • Wenliang Fang

DOI:

https://doi.org/10.62051/ijphmr.v5n2.04

Keywords:

Naringenin, Periodontitis, Network Pharmacology, Molecular Docking

Abstract

Objective: This study aims to elucidate the potential molecular mechanisms of naringenin in treating periodontitis using network pharmacology, molecular docking, and bioinformatics analysis. Methods: Potential targets of naringenin were predicted using databases such as SwissTargetPrediction and TCMSP. Periodontitis-related genes were retrieved from GeneCards, DisGeNET, and OMIM. Common targets were identified via Venn diagrams, and a protein-protein interaction (PPI) network was constructed using STRING. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses were performed with R. Molecular docking was conducted using AutoDock Vina to evaluate binding affinities between naringenin and core targets. Results: A total of 107 potential targets for naringenin were identified, with 49 overlapping with periodontitis-related genes. Key targets included IL1B, CXCL8, CD44, MMP2, EGFR, and ITGAM. Enrichment analysis revealed involvement in pathways such as HIF-1 signaling, cytokine-cytokine receptor interaction, and ferroptosis regulation. Molecular docking showed strong binding affinities. Conclusion: Naringenin exerts anti-periodontitis effects through multi-target interactions, primarily modulating inflammation, oxidative stress, and ferroptosis. This provides a theoretical basis for its clinical application.

References

[1] Martínez García Mireya & Hernández Lemus Enrique. (2021). Periodontal Inflammation and Systemic Diseases: An Overview. Frontiers in Physiology, 12, 709438-709438. https://doi.org/10.3389/FPHYS.2021.709438

[2] Georgios S. Chatzopoulos, Ziou Jiang, Nicholas Marka & Larry F. Wolff. (2024). Periodontal Disease, Tooth Loss, and Systemic Conditions: An Exploratory Study. International Dental Journal, 74 (2), 207-215. https://doi.org/10.1016/J.IDENTJ.2023.08.002

[3] Saifullah Qazi & Sharma Abhishek. (2023). Current Trends on Innovative Technologies in Topical Wound Care for Advanced Healing and Management. Current drug research reviews, https://doi.org/10.2174/0125899775262048230925054922

[4] Yuanqiang Jia, Xinjing Zhou, Yanan Liu, Xiaoyong Liu, Feiyue Ren & Hongzhi Liu. (2025). Novel Insights Into Naringenin: A Multifaceted Exploration of Production, Synthesis, Health Effects, Nanodelivery Systems, and Molecular Simulation. Molecular nutrition & food research, 69 (18), e70066. https://doi.org/10.1002/MNFR.70066

[5] Junlin Jiang, Xianhui Deng, Chengkai Xu, Yaxian Wu & Jianfeng Huang. (2025). Naringenin inhibits ferroptosis to reduce radiation-induced lung injury: insights from network Pharmacology and molecular docking. Pharmaceutical biology, 63 (1), 11-10. https://doi.org/10.1080/13880209.2025.2465312

[6] Felipe A. Pinho-Ribeiro, Ana C. Zarpelon, Victor Fattori, Marília F. Manchope, Sandra S. Mizokami, Rubia Casagrande & Waldiceu A. Verri. (2016). Naringenin reduces inflammatory pain in mice. Neuropharmacology, 105, 508-519. https://doi.org/10.1016/j.neuropharm.2016.02.019

[7] Li Jie, Cao Feng, Yin He-Liang, Huang Zi-Jian, Lin Zhi-Tao, Mao Ning... & Wang Gang. (2020). Ferroptosis: past, present and future. Cell death & disease, 11 (2), 88. https://doi.org/10.1038/s41419-020-2298-2

[8] Lu Li & Supratik Kar. (2025). Leveraging network pharmacology for drug discovery: Integrative approaches and emerging insights. Medicine in Drug Discovery, 27, 100220-100220. https://doi.org/10.1016/J.MEDIDD.2025.100220

[9] GuzmánFlores Juan Manuel, ArevaloCaro Catalina Maria, MartínezEsquivias Fernando, IsiordiaEspinoza Mario Alberto & Francode la Torre Lorenzo. (2023). Molecular Mechanism of Curcumin on Periodontitis: a Pharmacological Network Study. Journal of oral biosciences, 65 (4), 379-385. https://doi.org/10.1016/J.JOB.2023.08.004

[10] Ningli Li, Bowen Wang, Mingzhen Yang, Miaomiao Feng, Xiaoran Xu, Cory J. Xian... & Yuankun Zhai. (2025). The Multi-Target Action Mechanism for the Anti-Periodontitis Effect of Astragali radix Based on Bioinformatics Analysis and In Vitro Verification. Nutrients, 17 (4), 627-627. https://doi.org/10.3390/NU17040627

[11] Molecular Modeling Group, SIB Swiss Institute of Bioinformatics, University of Lausanne, Quartier UNIL-Sorge, Bâtiment Amphipôle, CH-1015 Lausanne, Switzerland., Molecular Modeling Group, SIB Swiss Institute of Bioinformatics, University of Lausanne, Quartier UNIL-Sorge, Bâtiment Amphipôle, CH-1015 Lausanne, Switzerland., Department of Oncology, University Hospital of Lausanne, Ludwig Cancer Research - Lausanne Branch, CH-1011 Lausanne, Switzerland., Molecular Modeling Group, SIB Swiss Institute of Bioinformatics, University of Lausanne, Quartier UNIL-Sorge, Bâtiment Amphipôle, CH-1015 Lausanne, Switzerland. & Department of Fundamental Oncology, University of Lausanne, Ludwig Cancer Research - Lausanne Branch, Route de la Corniche 9A, CH-1066 Epalinges, Switzerland.. (2019). SwissTargetPrediction: updated data and new features for efficient prediction of protein targets of small molecules. Nucleic acids research, 47 (W1), W357-W364. https://doi.org/10.1093/nar/gkz382

[12] Taheri Mohammad, Gholami Leila, Nicknafs Fwad, Hussen Bashdar Mahmud, ArsangJang Shahram, Sayad Arezou & GhafouriFard Soudeh. (2021). Transcript levels of cytokine coding genes in peripheral blood and tissues of patients with periodontitis. Human antibodies, 30 (1), 47-55. https://doi.org/10.3233/HAB-211507

[13] Miaomiao Feng, Xiaoran Xu, Ningli Li, Mingzhen Yang & Yuankun Zhai. (2025). [Mechanism of Cnidii Fructus in the treatment of periodontitis with osteoporosis based on network pharmacology, molecular docking, and molecular dynamics simulation]. West China journal of stomatology, 43 (2), 249-261. https://doi.org/10.7518/HXKQ.2025.2024275

Downloads

Published

21-11-2025

Issue

Section

Articles

How to Cite

Fang, W. (2025). Exploring the Mechanism of Action of Naringenin in the Treatment of Periodontitis Based on Network Pharmacology Methods. International Journal of Public Health and Medical Research, 5(2), 24-29. https://doi.org/10.62051/ijphmr.v5n2.04